Changes between Version 32 and Version 33 of u/madams

Timestamp:

06/02/15 13:54:32 (10 years ago)

Author:

madams

Comment:

—

u/madams

@@ -32 +32 @@
 = Scripts =
 
-> Under Construction
+[[CollapsibleStart(Submission of Post Processing)]]
+
+- Creates post processing directories in your out directory.
+- Edits and submits the jobs for your executable.
+- You do have to manually move the simulation into the directory once the job has completed.
+
+{{{
+#!/bin/bash                                                                                                                        
+
+   ## INITIALIZING INVARIANTS ##                                                                                                   
+
+#Put the name of your executable here!                                                                                             
+EXECUTABLE="astrobear_Bvn"
+#Put the name of your bash script here!                                                                                            
+SUBMISSION_SCRIPT="job.sh"
+
+   ## FINDING RUN DIRECTORIES ##                                                                                                   
+
+#/scratch/[USERNAME]/[REST OF PATH]/ Make sure script is here <--                                                                    
+
+cd /scratch/[USERNAME]/[REST OF PATH]/
+
+PP_PATH="Directory1, Directory2"
+
+   ## MAKING A LOOP ##                                                                                                             
+
+for d in ${PP_PATH}; do
+
+    cd ${d}
+
+      ## MAKING UNIQUE DIRECTORIES ##                                                                                              
+
+   #Name of the directory we're going to create in...                                                                              
+    DIRECTORY_NAME="${EXECUTABLE}_`echo ${d} | tr -d '/'`_`date +%s`"
+   #your out directory.                                                                                                            
+    OUTPUT_DIR="out/"
+
+   #Checker to see if you have an out directory.                                                                                   
+    if [ \! -e ${OUTPUT_DIR} ] || [ \! -d ${OUTPUT_DIR} ]; then
+        echo "There is a problem with your ${OUTPUT_DIR} directory, please check. Exiting."
+        exit
+    fi
+
+   #Makes a new directory in your out directory for post processing with the executable, run, and date in the name.                
+    mkdir out/${DIRECTORY_NAME}
+
+      ## EDITTING BATCH SCRIPT ##                                                                                                  
+   #Note this change is universal for all PP_PATH                                                                                  
+    sed -i 's/--reservation .*//' job.sh
+    sed -i 's/-N .*/-N 32/' job.sh
+    sed -i 's/--ntasks-per-node .*/--ntasks-per-node 16/' job.sh
+    sed -i 's/-c .*/-c 1/' job.sh
+    sed -i 's/-p .*/-p debug/' job.sh
+    sed -i 's/--time .*/--time 00-00:30:00/' job.sh
+    sed -i 's/#SBATCH --mail-user email1@pas.rochester.edu/##SBATCH --mail-user email1@pas.rochester.edu/' job.sh
+#    sed -i 's/#SBATCH --mail-user email2@pas.rochester.edu/##SBATCH --mail-user email2@pas.rochester.edu/' job.sh                 
+    sed -i "s/astrobear.* > astrobear.*.log/${EXECUTABLE} > ${EXECUTABLE}.log/" job.sh
+
+      ## SUBMIT BATCH SCRIPT ##                                                                                                    
+    sbatch ${SUBMISSION_SCRIPT}
+
+    cd ../../
+done
+}}}
+[[CollapsibleEnd]]
+
 
 \\
@@ -38 +103 @@
 = Resources =
 
-== Software Documentation & Resources ==
+== Software Documentation ==
 
 [[CollapsibleStart(ParaView:)]]