MHD SHEAR RUNS

Here is the page that consists of our diagnostics and figures for the paper: ​CollidingFlowsFigures

5 Production Runs:

Beta	Shear Angle	Purpose	Final time	Final Frame
10	0	Compare with Jonathan's work	27 Myr	273
10	15	Compare with Christina's work	" "	"
10	30	" "	" "	"
10	60	" "	complete out to 32.5 Myr	328
1	60	Compare a strong field	20 Myr	200

For orientation, here is an image that shows the flows and tilted interface,

TableView of Column Density Maps

	Beta 1, Shear 60	Beta 10, Shear 60	Shear 30	Shear 15	No Shear
down-the-barrel (sight along the flow)
movies	b1s60cdm1.gif​	b10s60cdm1.gif​	b10s30cdm1.gif​	b10s15cdm1.gif​	b10noshearcdm1.gif​
down-x (normal angle to flow, colliding from top and bottom)
movies	b1s60cdm2.gif​	b10s60cdm2.gif​	b10s30cdm2.gif​	b10s15cdm2.gif​	b10noshearcdm2.gif​
down-y (normal angle to flow, colliding from left and rt.)
movies	b1s60cdm3.gif​	b10s60cdm3.gif​	b10s30cdm3.gif​	b10s15cdm3.gif​	b10noshearcdm3.gif​

CDM Movies by run

B10, Shear 0
movies	B10_0_vistacdm.gif​
B10, Shear 15
movies	b10s15_galaxy_cdm.gif​
B10, Shear 30
movies	b10s30_galaxy_cdm.gif​
B10, Shear 60
movies	b10s60_galaxy_cdm.gif​
B1, Shear 60
movies	b1s60_galaxy_cdm.gif​

Sink Formation

Sink Formation

Comparing sink formation for different runs, and for the high vs low resolution runs. As expected, low res runs produce more sinks. Both resolution runs don't produce sinks in the strong field/shear case. The no shear case wasn't run in low resolution also, possibly misleading in plot.

Interesting how the high and low resolution runs take on opposite trends here,

Same high res data in tabular form:

	Beta 10, Shear 60	Shear 30	Shear 15	No Shear
No. sinks by 27 Myr:	0	1	1	4 (1 more sink between 20&27 Myr)
First sink forms at frame:	—	138	188	111
Time (Myr):	—	13.62	18	11

For two levels of refinement:

	Beta 1, Shear 60	Beta 10, Shear 60	Shear 30	Shear 15	No Shear
No. sinks by 20 Myr:	0	0	0	4	4
First sink forms at frame:	—	—	—	124	122
Time (Myr):	—	—	—	12.238	12.09

Here​ is a movie showing the S30 case down the barrel and down y (left 2 columns) and S15 down y in right column, since I found it interesting that the low res S30 case didn't make a sink.

Resolution Studies

Resolution Studies:

Was thinking of doing a convergence study for the Shear 60 case so I could see if there was a convergence effect for the different field strengths?

Something like 4 little resolution tests out to frame 50:

Beta	Shear Angle	maxlevel	Status
10	60	3	complete
10	60	4	gives error
10	60	6	complete
1	60	3	complete
1	60	4	gives error
1	60	6	complete

Given the maxlevel = 4 is giving an error, we ran our lower maxlevel out to 3. Also ran 2 convergence runs on the Beta = 10, Shear 15 case to compensate:

Beta	Shear Angle	maxlevel	Status
10	15	4	complete
10	15	6	complete

Job Monitoring Table:

Beta	Shear	Machine, Directory	Frame	Filling Fracs	Walltime left (predicted and queued remaining)	Info allocs, Message allocs	No. cells finest	Framerate (mins/frame), no. of cores	Notes
1	15	BS, /scratch/ekamins2/MHD_Shear/ Beta1/xfield/Shear15/Restart_ResJune05_2014/ Less_Levels/Trying_New_Frame_Copy/Test_Same_Levels_As_Orig	restart from frame = 56						code prints hypre errors after restarting files from bamboo using a different number of levels. didn't get these errors when I restarted using same number of levels.
1	60	BS, /scratch/ekamins2/MHD_Shear/Beta1/xfield/Shear60	67/200	0.087 0.541 0.615 0.243 0.286	9days/0days	265.2 gb 104.5 mb, 128.0 mb	19,440,450	1.2hr/frame, 4096 cores	Hit time limit
		BS, /scratch/ekamins2/MHD_Shear/Beta1/xfield/Shear60/Restart	86/200	0.096 0.537 0.628 0.295 0.402	13days/0days	240 gb 167 mb, 64 mb	37,101,854	3hr/frame, 2048 cores	Hit time limit
		BS, /scratch/ekamins2/MHD_Shear/Beta1/xfield/Shear60/Restart/Restart	89/200	0.097 0.538 0.628 0.298 0.411	12days/0days	243 gb 168 mb, 64 mb	~37,101,854	3hr/frame, 2048 cores	Hit time limit
		BS, /scratch/ekamins2/MHD_Shear/Beta1/xfield/Shear60/Restart/Restart/Restart	93/200	0.098 0.539 0.625 0.304 0.435	12.5days/0days	250.8 gb, 178.9 mb, 64.0 mb			Files taken off of BS (07/28)
		BS, /scratch/ekamins2/MHD_Shear/Beta1/xfield/Shear60/Restart/Restart/Restart/Restart	102/200	0.101 0.543 0.631 0.314 0.459	17.5days/0days	267.4 gb 184.0 mb, 64.0 mb		3hr/frame, 2048 cores
		BS, /scratch/ekamins2/MHD_Shear/Beta1/xfield/Shear60/Restart/Restart/Restart/Restart/Restart	106/200	0.102 0.549 0.627 0.313 0.458	1.3mo/0	263.9 gb 328.8 mb, 64.0 mb		4hr/frame, 2048 cores
		BS, /scratch/madams15/CollidingFlows/Beta1/Shear60/	112/200	0.105 0.553 0.621 0.312 0.469	13.5days/0days	271.6 gb, 193.1 mb, 64.0 mb		~4.5hr/frame, 2048 cores	Reservation. Testing what node fraction would be most efficient. Stayed with 128.
		BS, /scratch/madams15/CollidingFlows/Beta1/Shear60/Restart/	122/200	0.106 0.559 0.631 0.321 0.467	16.8days/0days	282.5 gb, 197.6 mb, 64.0 mb		~5hr/frame, 2048 cores	Reservation. Stayed with 128 nodes. Started with 48 hours left on reservation.
		BS, /scratch/madams15/CollidingFlows/Beta1/Shear60/Restart/Restart	130/200	0.109 0.558 0.640 0.328 0.455	16.1days/0days	288.3 gb, 199.5 mb, 64.0 mb		~5hours/frame, 2048 cores	Previous reservation got extended. Stayed with 128 nodes. Ran for 48 hours until it went over the soft limit and BS killed the job.
		BS, /scratch/madams15/CollidingFlows/Beta1/Shear60/Restart/Restart/Restart/	142/200	0.106 0.576 0.635 0.312 0.450	8.8days/0days	381.9 gb, 138.9 mb, 128.0 mb		~4hours/frame, 4096 cores	On reservation. madams15-20140807 starting on Thursday at 8AM for 5 days.ReservationName=madams15-20140807 StartTime=2014-08-07T08:00:00 EndTime=2014-08-12T08:00:00 Duration=5-00:00:00 Nodes=bg0000 NodeCnt=512 CoreCnt=8192 Features (null) PartitionName=standard Flags= Users=ekamins2,madams15 Accounts=(null) Licenses=(null) State=INACTIVE
		BS, /scratch/madams15/CollidingFlows/Beta1/Shear60/Restart/Restart/Restart/Restart/	148/200	0.114 0.575 0.638 0.344 0.479	10days/0days	310.2gb, 213.3 mb, 64.0mb		~5hours/frame, 2048 cores	On reservation.
		BS, /scratch/madams15/CollidingFlows/Beta1/Shear60/Restart/Restart/Restart/Restart/Restart	TBA/200	TBA	TBA	TBA		TBA, 4096 cores	On reservation.
10	15	BS, /scratch/ekamins2/MHD_Shear/Beta10/Shear15	36/200	0.142 0.547 0.575 0.183 0.367	8days/0days	233.6 gb 58.7 mb, 192.0 mb	9,058,432	50 mins/frame on 8192 cores	Reservation
		BS, /scratch/ekamins2/MHD_Shear/Beta10/Shear15/Restart	43/200	0.155 0.546 0.565 0.214 0.375	7days/0days	259.3 gb 62.6 mb, 192.0 mb	11,588,046	1hr/frame, 8192 cores	reservation
		BS, /scratch/ekamins2/MHD_Shear/Beta10/Shear15/Restart/Restart	57/200	0.186 0.573 0.533 0.266 0.388	7days/0days	315.9 gb 68.6 mb, 192.0 mb	17,705,187	1hr/frame, 8192 cores	Non-threaded, non-global partition Hypre, reservation
		BS, /scratch/ekamins2/MHD_Shear/Beta10/Shear15/ Restart/Restart/Restart_With_Threading	69/200	0.228 0.582 0.548 0.356 0.450	11days/0days	221.7 gb 155.2 mb, 64.0 mb	35,179,794	2hr/frame,2048 cores	Standard queue (2048 cores). Eta. was originally 6/18/2014, but actually started on 6/23, 3 AM. Copied non-threaded version of astrobear into the run directory and named it threaded to match the submitted batch script, because found the threaded version of the code threw errors
		BS, /scratch/ekamins2/MHD_Shear/Beta10/Shear15/ Restart/Restart/Restart_With_Threading/Restart	83/200	0.255 0.612 0.562 0.36 0.418	14 days/0days	326 gb 122 mb, 128.0 mb	39,856,494	2.5hr/frame,4096 cores	reservation
		BS, /scratch/ekamins2/MHD_Shear/Beta10/Shear15/ Restart/Restart/Restart_With_Threading/Restart/Restart	94/200	0.277 0.635 0.571 0.391 0.407	10 days/0days	362 gb 131 mb, 128.0 mb	48,267,318	2.5hr/frame,4096 cores	reservation, disk quota exceeded
		BS, /scratch/ekamins2/MHD_Shear/Beta10/Shear15/ Restart/Restart/Restart_With_Threading/Restart/Restart/Restart	95/200	.279 .638 .57 .395 .409	13 days/0days	365 gb 143 mb, 128.0 mb	49,500,836	NA	NA
		BS, /scratch/ekamins2/MHD_Shear/Beta10/Shear15/Restart/Restart/Restart_With_Threading/Restart/Restart/Restart/Restart	105/200	.303 .647 .581 .414 .403	10 days/0days	400 gb 148 mb, 128.0 mb	57,387,965	3hr/frame, 4096 cores	Disk quota exceeded, files are ~9 GB each at this point
		BS, /scratch/ekamins2/MHD_Shear/Beta10/Shear15/Restart/Restart/Restart_With_Threading/Restart/Restart/Restart/Restart/Restart/Restart	109/200	.325 .663 .596 .465 .436	17.5 days/0days	344 gb 236 mb, 64 mb	78,627,595	5hr/frame, 2048 cores	Still running, size of files = 13 GB
		BS, /scratch/ekamins2/MHD_Shear/Beta10/Shear15/Restart/Restart/Restart_With_Threading/Restart/Restart/Restart/Restart/Restart/Restart/Restart/	119/200	0.344 0.675 0.610 0.483 0.438	18.3days/0days	372.7 gb, 250.9 mb, 64.0 mb		5hr/frame, 2048 cores	Files taken off of BS (07/28)
		BS, /scratch/ekamins2/MHD_Shear/Beta10/Shear15/Restart/Restart/Restart_With_Threading/Restart/Restart/Restart/Restart/Restart/Restart/Restart/Restart	120/200	0.344 0.680 0.614 0.485 0.436	24.4days/0days	374.3 gb, 259.0 mb, 64.0 mb		10hr/frame, 2048 cores	Catching chombos for Marissa's runs.
		BS, /scratch/madams15/CollidingFlows/Beta10/Shear15	133/200	0.367 0.670 0.565 0.406 0.388	6days/0days	592.6 gb, 116.2 mb, 192.0 mb		~3-4hr/frame, 2048 cores, ~2hr/frame, 8192 cores	Reservation. Testing what node fraction would be most efficient. Stayed with 128 for 07/24, then bumped up to 256 07/25, then finally 512 for another 24 hours.
		BS, /scratch/madams15/CollidingFlows/Beta10/Shear15/Restart	139/200	0.386 0.698 0.616 0.496 0.468	22.1days/0days	422.4 gb, 296.5 mb, 64.0 mb		7hr/frame, 2048 cores	Restarted with 128 nodes on 07/26.
		BS, /scratch/madams15/CollidingFlows/Beta10/Shear15/Restart/Restart/	144/200	0.398 0.695 0.617 0.499 0.472	20.4days/0days	432.4 gb, 290.9 mb, 66.1 mb		~9hr/frame, 2048 cores	Previous reservation got extended until 08/04 at 08:00:00. Stayed with 128 nodes. Job ran for 48 hours until memory went over soft limit.
		BS, /scratch/madams15/CollidingFlows/Beta10/Shear15/Restart/Restart/Restart/	149/200	0.407 0.699 0.620 0.508 0.455	13.3days/0days	441.2gb, 298.9mb, 66.9mb		~8hr/frame, 2048 cores	On reservation.
		BS, /scratch/madams15/CollidingFlows/Beta10/Shear15/Restart/Restart/Restart/Restart/	160/200	0.414 0.686 0.595 0.469 0.433	9.2days/0days	535.8gb, 186.1mb, 128.0mb		~3hr/frame, 4096 cores	On reservation.
		BS, /scratch/madams15/CollidingFlows/Beta10/Shear15/Restart/Restart/Restart/Restart/Restart/	TBA/200	TBA	TBA	TBA		TBA, 2048 cores	On reservation.
10	30	BS, /scratch/ekamins2/MHD_Shear/Beta10/Shear30	7/200	0.058 0.467 0.607 0.000 0.000	1 day/0	29.1 gb 81.7 mb, 17.3 mb	2,482,538	7mins/frame, 512 cores	Running a bigger box (200,75,75 pc) with same eff. resolution to prevent backflow into colliding flow object. Debug queue, 1 hour, 512 cores
		BS, /scratch/ekamins2/MHD_Shear/Beta10/Shear30/ Testing_Smaller_Box	7/200	0.163 0.536 0.607 0.000 0.000	1 day/0	28.5 gb 83.0 mb, 17.5 mb			Running original box size (62.5,75,75 pc) with same eff. resolution to see how framerate changes. Debug queue, 1 hour, 512 cores. Same framerate, so making box longer in x seems to not cost much
		BS, /scratch/ekamins2/MHD_Shear/Beta10/Shear30/Restart	27/200	0.053 0.515 0.625 0.090 0.204	5.6 days/0	136.5 gb 69.9 mb, 101.8 mb	3,026,761	30mins/frame, 4096 cores	Reservation, ekamins2-20140623
		BS, /scratch/ekamins2/MHD_Shear/Beta10/Shear30/ Restart/Restart	64/200	0.077 0.494 0.567 0.260 0.362	14 days/0	249 gb 99 mb, 128.0 mb	19,616,658	2hr/frame, 4096 cores	Reservation, ekamins2-20140623
		BS, /scratch/ekamins2/MHD_Shear/Beta10/Shear30/ Restart/Restart/Restart	78/200	.092 .529 .546 .307 .354	16days/0days	293 gb, 114 mb, 128 mb	27,907,450	3hr/frame on 4096 cores	Reservation, ekamins2-20140630
		BS, /scratch/ekamins2/MHD_Shear/Beta10/Shear30/ Restart/Restart/Restart/Restart	95/200	.107 .552 .566 .361 .354	11days/0days	360 gb, 130 mb, 128 mb	41,284,985	3hr/frame on 4096 cores	Reservation, ekamins2-20140630
		BS, /scratch/ekamins2/MHD_Shear/Beta10/Shear30/ Restart/Restart/Restart/Restart/Restart	110/200	.115 .571 .587 .391 .367	10.4days/0days	404 gb, 145 mb, 128 mb	53,451,174	3hr/frame on 4096 cores	Reservation, ekamins2-20140630
		BS, /scratch/ekamins2/MHD_Shear/Beta10/Shear30/ Restart/Restart/Restart/Restart/Restart	110/200	.115 .571 .587 .391 .367	10.4days/0days	404 gb, 145 mb, 128 mb	54,856,949	3hr/frame on 4096 cores	Reservation, ekamins2-20140630
		BS, /scratch/ekamins2/MHD_Shear/Beta10/Shear30/Restart/Restart/Restart/Restart/Restart/Restart	114/200	.117 .576 .593 .398 .371	10.9days/0days	415 gb, 147 mb, 128 mb	53,451,174	3hr/frame on 4096 cores	Reservation, ekamins2-20140630, 9.6 GB/frame
		BS, /scratch/ekamins2/MHD_Shear/Beta10/Shear30/Restart/Restart/Restart/Restart/Restart/Restart/Restart	122/200	0.130 0.587 0.596 0.456 0.412	18.1days/0	363.2 gb, 246.8 mb, 64.0 mb		~5-6hr/frame, 2048 cores
		BS, /scratch/ekamins2/MHD_Shear/Beta10/Shear30/Restart/Restart/Restart/Restart/Restart/Restart/Restart/Restart/	123/200	0.132 0.583 0.595 0.461 0.424	21.1days/0	367.8 gb, 245.9 mb, 64.0 mb		~8hr/frame, 2048 cores	Catching chombos for Marissa's runs.
		BS, /scratch/madams15/CollidingFlows/Beta10/Shear30	128/200	0.136 0.587 0.601 0.465 0.418	1.2mo/0	377.0 gb, 252.4 mb, 64.0 mb		9hr/frame, 2048 cores	Started Jul 24 08:46, cancelled to test other runs, started again at Jul 26 16:41.
		BS, /scratch/madams15/CollidingFlows/Beta10/Shear30/Restart/	143/200	0.131 0.620 0.570 0.392 0.367	7.8days/0days	599.5 gb, 122.6 mb, 256.0 mb		~2-3hours/frame, 8192 cores	Started immediately when received word about reservation extension until 08/04 at 08:00:00. Ran on 512 cores, half of BS, for 48 hours.
		BS, /scratch/madams15/CollidingFlows/Beta10/Shear30/Restart/Restart/	153/200	0.141 0.622 0.583 0.442 0.400	9days/0days	504.3 gb, 175.0 mb, 128.mb		~4-5hours/frame, 4069 cores	Still on the same reservation. Ran with Beta1Shear60 and Beta10Shear15 (both at 128 cores), while this ran at 256 cores. Stopped eventually when we could no longer write files due to soft limit.
		BS, /scratch/madams15/CollidingFlows/Beta10/Shear30/Restart/Restart/Restart	158/200	0.153 0.625 0.595 0.494 0.437	18.2days/0days	437.6gb, 302.6mb, 65.8mb		~8.5hours/frame, 2048 cores	On reservation.
		BS, /scratch/madams15/CollidingFlows/Beta10/Shear30/Restart/Restart/Restart/Restart	162/200	0.156 0.619 0.601 0.495 0.446	13.6days/0days	445.6gb, 304.2mb, 68.0mb		~8.5hours/frame, 2048 cores	On reservation.
		BS, /scratch/madams15/CollidingFlows/Beta10/Shear30/Restart/Restart/Restart/Restart/Restart	TBA/200	TBA	TBA	TBA		TBA, 2048 cores	On reservation.
10	60	BS, /scratch/ekamins2/MHD_Shear/Beta10/Shear60	5/200	0.078 0.522 0.680 0.000 0.000	1.6days/0	37.6 gb 104.3 mb, 22.9 mb	4,180,579	10mins/frame, 512 cores	Debug queue, 512 cores, 1 hour, 200x752 pc
		BS, /scratch/ekamins2/MHD_Shear/Beta10/Shear60/Restart	91/200	0.124 0.484 0.586 0.158 0.205	7.2 days/0 day	254.7 gb 99.0 mb	11,008,243	1hr/frame, 4096 cores	Died with memory error. Reservation ekamins2-20140623
		BS, /scratch/ekamins2/MHD_Shear/Beta10/Shear60/Restart/Restart	110/200	0.146 0.525 0.570 0.246 0.240	8.4 days/0 day	241.2 gb 170.2 mb, 64.0	24,927,329	2.5hr/frame, 2048 cores	Reservation ekamins2-20140623
		BS, /scratch/ekamins2/MHD_Shear/Beta10/Shear60/Restart/Restart/Restart	116/200	0.151 0.527 0.559 0.260 0.250	10.8days/0	248.6 gb, 171.3 mb, 64.0 mb		2048 cores	Chombos/sinks moved off of BS. Post-processing is left (07/28).
		BS, /scratch/ekamins2/MHD_Shear/Beta10/Shear60/Restart/Restart/Restart/Restart/	130/200	0.162 0.535 0.569 0.268 0.259	8.7days/0	269.3 gb, 189.6 mb, 64.0 mb		3hr/frame, 2048 cores
		BS, /scratch/ekamins2/MHD_Shear/Beta10/Shear60/Restart/Restart/Restart/Restart/Restart/	133/200	0.164 0.541 0.564 0.282 0.260	7.9days/0	274.9 gb, 189.5 mb, 64.0 mb		3hr/frame, 2048 cores
		BS, /scratch/madams15/CollidingFlows/Beta10/Shear60	140/200	0.174 0.547 0.550 0.303 0.251	9.7days/0	288.4 gb, 196.4 mb, 64.0 mb		4hr/frame, 2048 cores	07/24-07/25 Reservation at 128 cores.
		BS, /scratch/madams15/CollidingFlows/Beta10/Shear60/Restart/	151/200	0.180 0.547 0.544 0.318 0.269	6.7days/0	305.3 gb, 211.8 mb, 64.0 mb		~4hr/frame, 2048 cores
		BS, /scratch/madams15/CollidingFlows/Beta10/Shear60/Restart/Restart/	153/200	0.184 0.543 0.545 0.318 0.273	8.6days/0days	309.2 gb, 209.7 mb, 64.0 mb		~4hours/frame, 2048 cores	Ran on 128 nodes in the Standard queue. As our reservation took up half of the machine, this run was pending for a while. Error when soft limit hit: 2014-08-02 03:42:44.215 (ERROR) [0x40001069280] ibm.runjob.client.Output: could not write: Disk quota exceeded
		BS, /scratch/madams15/CollidingFlows/Beta10/Shear60/Restart/Restart/Restart	159/200	0.188 0.540 0.553 0.326 0.280	7.0days/0days	318.8gb, 217.9mb, 64.0mb		4hours/frame, 2048 cores	Running on 128 nodes in the Standard queue. Error found in the astrobear.log file: processor 1339 requesting restart due to nan in flux wl= 0.359789776662163E+01 0.674778789358754E+01 0.657065342093277E+02 0.258750140448991E+00 0.113133666\ 748740E+05 0.731432876571028E+01 0.517505399598208E+02 -0.503691004114713E+01 0.174425741998655E+00 0.353\ 838024064413E+01
		BS, /scratch/madams15/CollidingFlows/Beta10/Shear60/Restart/Restart/Restart/Restart/	163/200	0.190 0.547 0.550 0.327 0.282	7.7days/0days	324.9gb, 218.6mb, 64.0mb		6hours/frame, 2048 cores	Running on 128 nodes in the standard queue. No more errors; clean run.
		BS, /scratch/madams15/CollidingFlows/Beta10/Shear60/Restart/Restart/Restart/Restart/Restart	167/200	0.192 0.549 0.551 0.333 0.284	15.8days/0days	323.5gb, 222.3mb, 64.0mb		6hours/frame, 2048 cores	Running on 128 nodes in the standard queue.
		BS, /scratch/madams15/CollidingFlows/Beta10/Shear60/Restart/Restart/Restart/Restart/Restart/Restart	TBA/200	TBA	TBA	TBA		TBA 2048 cores	Running on 128 nodes in the standard queue. Currently pending.