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External Links and Literature Page
- AstroBEAR — AstroBEAR's website.
Literature
Numerics
- Carroll-Nellenback et al. — Paper discussing implementation of AMR in AstroBEAR 2.0]
- AMR Defined — The Wikipedia entry for AMR.
- AMR tutorial — An overview of the Adaptive Mesh Refinement algorithm.
- BearCLAW Manual — Sorin's manual for the original BEARCLAW code, includes an algorithmic view of AMR.
- Berger & Oliger, 1984 — Dr. Berger's original AMR paper.
- Berger and Rigoutsos, 1991 — Outlines the Berger-Rigoutsos algorithm used to refine the AMR grids.
- Cunningham et al. 2007 — Sections 3 and 4 discuss the use of AMR in MHD.
Radiation Transfer
- Jiang et al. 2012 — A Godunov Method for Multidimensional Radiation Magnetohydrodynamics based on a variable Eddington tensor
- Davis et al. 2012 — A Radiation Transfer Solver for Athena using Short Characteristics
- Krumholz et al. 2007 — Flux limited diffusion methods paper.
Jonathan's Super Numerical Library
- Sanders et al. 1998 — H viscosity method cited in Gardiner & Stone 08.
- Mignone 2007 — A simple and accurate Riemann solver for isothermal MHD
- Mignone et al. 2005 — The Piecewise Parabolic Method for Multidimensional Relativistic Fluid Dynamics
- Colella & Woodward 1983 — The Piecewise Parabolic Method (PPM) for gas-dynamical simulations
- Falle et al. 1998 — A multidimensional upwind scheme for magnetohydrodynamics
- Mignone et al 2007 — PLUTO: a Numerical Code for Computational Astrophysics
- Gardiner & Stone 2007 — An unsplit Godunov method for ideal MHD via constrained transport in three dimensions
- Gardiner & Stone 2004 — An unsplit Godunov method for ideal MHD via constrained transport
- Gardiner & Stone 2008 — Athena: A New Code for Astrophysical MHD
- Miyoshi & Kusano 2005 — A multi-state HLL approximate Riemann solver for ideal magnetohydrodynamics
- Miller & Colella 2002 — A Conservative Three-Dimensional Eulerian Method for Coupled Solid–Fluid Shock Capturing
- Colella and Sekora 2008 - A Limiter for PPM that Preserves Accuracy at Smooth Extrema
- Sekora and Colella 2009 - Extremum-Preserving Limiters for MUSCL and PPM
Alternate AMR Forms
- The RAMSES Code — A cell-based AMR implementation.
- Khokhlov, 1998 — The paper outlining the Fully-Threaded Tree algorithm used in RAMSES.
- Teyssier, 2002 — The first paper about the RAMSES code.
Self-Gravity / Core Collapse Papers
- Krumholz et al. — Sink Particle algorithm
- Federrath et al. — Alternative Sink Particle algorithm
- Truelove et al, 1997 — A 1D test of a core-collapse model.
- Matsumoto and Hanawa, 2003 — Lots of 2D numerical simulations of collapsing clouds.
- Banerjee et al, 2004 — A good starting point, containing a useful analytical model of a Bonnor-Ebert sphere.
Gravo-turbulence Papers
- Index — Comprehensive list of publications on the subject.
Planetary Nebulae Papers
- PN Index — Martin/Erica's index of papers.
JETSET Papers
- The original PDF may be found here, or as an attachment to this wiki page.
- Chevalier & Imamura, 1982 — Pertains to the radiative shock problem in the JetSet code comparison.
- Gaetz, Edgar & Chevalier, 1988 — More !JETSET radiative shock info.
- Miura & Pritchett, 1982 — Pertains to the JETSET Kelvin-Helmholtz problem.
Cooling and various microphysics
- Smith & Rosen, 2003 — Very nice appendix outlining various cooling and chemical processes
- Dalgarno & McCray, 1972 — Provides the cooling curve we use.
Other Useful Papers
- de Colle & Raga, 2006 — 2.5D MHD radiative YSO jets and their Halpha emission
- Inoue & Inutsuka, 2008 — Describes IICool method
- Koyoma and Inutsuka 2000 — Describes microphysics behind IICool curve
- Berger & Colella, 1989 — Discusses AMR in a hydrodynamic shock.
- Poludnenko et al. 2002 — One of our group's first AMR research papers.
- Miniati & Colella, 2006 — Contains useful information about working with stiff source terms.
External Links
Programming
- Intel Fortran Compiler — Official site for Intel's Fortran compiler.
- Intel's BlueGene Fortran comipler documentation
- Fortran tutorial — A Fortran 90 tutorial from the University of Liverpool.
- Subversion (aka SVN) — The open-source version control project we use.
- SWIG — A utility that takes C modules and generates Python wrappers for them. Useful if you want to extend VisIt's HDF5 capabilities and don't know Python very well.
Parallel Computing
- MPI-CH — MPI tutorial and home page for MPI-CH.
- MPI tutorial — MPI tutorial and API reference.
- OpenMPI — Official site for the OpenMPI specificaion.
- OpenMP — Official site for the OpenMP specification.
- OpenMP tutorial — A much more accessible OpenMP tutorial and reference site.
HDF5 Document Format
- HDF5 — Official website for HDF5 specification.
- Chombo HDF — Specifications for the Chombo HDF file format.
Visualization Packages
- ChomboVis — Official website for ChomboVis visualization package.
- VisIt — Official website for VisIt visualization package.
- PGPlot — A plotting package used within AstroBEAR.
- OpenDX — A visualization package supported by AstroBEAR.
Miscellaneous
- CFD-Wiki — The free computational fluid dynamics wiki.
Books
Programming
- An Introduction to Fortran 90 for Scientific Computing — by Ortega, James M. — A very short introduction to Fortran 90 programming, makes an excellent reference for simple stuff. This book is in the UR library.
Attachments (1)
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jetset_tests.pdf
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The original PDF document outlining the tests for the JETSET collaboration code-comparison in 2008.
Download all attachments as: .zip
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